mapmakerQTL.tutorial

Whitehead InstituteMapping Genes Controlling Quantitative TraitsUsing MAPMAKER/QTL Version 1.1:A Tutorial and Reference ManualStephen E. Lincoln, Mark J. Daly, and Eric S. LanderA Whitehead Institute for BiomedicalResearch Technical ReportSecond Edition, January, 1993(Beta Distribution 3B)All MAPMAKER Software and Documentation is © Copyright 1987-1993,Whitehead Institute for Biomedical Research. All Rights Reserved.All software and documentation is provided without warranty of any kind.See the included license agreement for details.Please address all correspondence to:MAPMAKER Internet: mapmaker@genome.wi.mit.educ/o Dr. Eric Lander Bitnet: mapm@mitwibrWhitehead Institute FAX: 617-258-65059 Cambridge CenterCambridge, MA 02142 USAMapping Genes Controlling Quantitative TraitsUsing MAPMAKER/QTLTable of Contents:I. Command Index 2II. Quick Reference Sheet 4III. Tutorial for MAPMAKER/QTL 7Getting Data into MAPMAKER/QTL 8Starting MAPMAKER/QTL 10Preliminary Examination of the Trait Data 12Scanning the Genome for Putative QTLs 16Automatically Summarizing the Results of a Genome Scan 24Other Methods for Displaying QTL Maps 26Fitting QTLs to Particular Genetic Models 30Fitting Multiple QTLs Simultaneously 38IV. MAPMAKER/QTL Command Reference 43MAPMAKER/QTL Tutorial Page 12MAPMAKER/QTL Tutorial Page 23MAPMAKER/QTL Tutorial Page 34MAPMAKER/QTL Tutorial Page 45MAPMAKER/QTL Tutorial Page 5MAPMAKER/QTL Tutorial Page 6MAPPING QUANTITATIVE ...