5.PAtlas.tutorial.4.09

ƒƒƒƒƒƒƒƒƒƒƒƒƒSBEAMS – Proteomics Tutorial Eric Deutsch Please follow along in this tutorial as we go through it in the class, or go your own pace if you choose. Feel free to add your own notes. If you make notes or have suggestions or bug reports that might be useful for others, please email them to edeutsch@systemsbiology.org. 1. Open a web browser and login (recommend Firefox to use FireGoose plugin): o http://www.sbeams.org/sbeams/ o Click “Login to SBEAMS” o Login with the account information provided (classNN) 2. Go to Proteomics Module Home Page (link on left nav bar) and test controls o Current Project o My Projects o Accessible Projects o Click on project names under “Accessible Projects” to switch current projects o Explore several different projects o Click on [View/Edit Full Project Information] hyperlink to view project attributes o Click BACK and then [View/Edit Experiment Description] under Experiments. 3. Explore the mmarelli – pxproteome project/experiment: o Set the Current Project to mmarelli – pxproteome o Click on [Proteomics Home] or [My Home] to get back to the top page o View project and experiment attributes. READ the Experiment Description for “pxproteome” experiment! Some questions below assume you understand some of the ideas behind the experiment! o Click on “Number of MS Runs: 14” (scroll down when page appears!!) o Click on some TIC Plots in the table o Click on some other hyperlinks in the ...