biomed

Savoirs

HMMEditor: a visual editing tool for profile hidden Markov model

Dai Jianyong, Cheng Jianlin, Cheng

Savoirs

Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat

Yue Feng, Cui Liying, Depamphilis, Tang Jijun, Tang, Moret

Savoirs

Transcription network construction for large-scale microarray datasets using a high-performance computing approach

Wu Qishi, Wu, Zhu

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Algorithms to estimate the lower bounds of recombination with or without recurrent mutations

Liu Xiaoming, Fu, Fu Yun-Xin

Savoirs

Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection

Deng, Deng Youping, Li Guo-Zheng, Meng Hao-Hua, Yang Mary, Yang

Savoirs

Bayesian biclustering of gene expression data

Liu, Gu Jiajun

Savoirs

A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions

Luo Zuojie, Li Jianling, Deng Youping, Huang Xudong, Ma Yan, Huang, Yang

Savoirs

Stability analysis of genetic regulatory network with additive noises

Jin Yufang, Lindsey Merry, Lindsey

Savoirs

Efficient non-unique probes selection algorithms for DNA microarray

Deng Ping, Thai, Ma Qingkai, Wu Weili, Wu

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XMAN: extreme MApping of OligoNucleotides

Carroll, Brown Myles, Liu, Wei Li

Savoirs

Prediction-based approaches to characterize bidirectional promoters in the mammalian genome

Elnitski, Yang

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Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome

Li Lang, Nephew, Edenberg, Zhou, Liu Yunlong, Wang Guohua, Wang Xin, Wang Yadong, Liu, Yang

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A comparative study of different machine learning methods on microarray gene expression data

Pirooznia Mehdi, Deng, Deng Youping, Yang

Savoirs

Selection of thermodynamic models for combinatorial control of multiple transcription factors in early differentiation of embryonic stem cells

Chen Chieh-Chun, Zhu Xin-Guang, Zhong Sheng, Zhong

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Oxygen consumption is depressed in patients with lactic acidosis due to biguanide intoxication

Protti Alessandro, Russo Riccarda, Tagliabue Paola, Vecchio Sarah, Rudiger Alain, Foti Giuseppe, Rossi Anna, Mistraletti Giovanni, Gattinoni, Gattinoni Luciano, Singer Mervyn

Savoirs

Using RNase sequence specificity to refine the identification of RNA-protein binding regions

Wang Xin, Shen Changyu, Wang Xinguo, Edenberg, Sanford, Liu Yunlong, Wang Guohua, Li Lang, Mooney, Liu

Savoirs

Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins

Mao Jinghe, Shenwu Ming, Allen Wilbur, Robertson Lashonda, Deng, Deng Youping, Habib Tanwir, Kang Baobin, Yang

Savoirs

Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida

Gong Ping, Guan Xin, Inouye, Deng Youping, Pirooznia Mehdi, Perkins

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Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition

Habib Tanwir, Zhang Chaoyang, Deng, Deng Youping, Yang

Savoirs

An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer

Nunez-Iglesias Juan, Nevins, Xu Min, Kao, West Mike, Zhou

Savoirs

Semantically linking and browsing PubMed abstracts with gene ontology

Vanteru, Shaik, Yeasin, Yeasin Mohammed

Savoirs

Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response

Wu Liyou, Yang Yunfeng, Luo Feng, Parsons, Palumbo, Zhou, Zhou Jizhong, Harris

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Brain metabolism is significantly impaired at blood glucose below 6 mM and brain glucose below 1 mM in patients with severe traumatic brain injury

Meierhans Roman, Béchir Markus, Ludwig Silke, Sommerfeld Jutta, Brandi Giovanna, Haberthür Christoph, Stocker Reto, Stover

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Sex differences in the impact of ozone on survival and alveolar macrophage function of mice after Klebsiella pneumoniaeinfection

Mikerov, Gan Xiaozhuang, Umstead, Miller Laura, Chinchilli, Phelps, Floros, Floros Joanna

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Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners

Oldfield, Meng Jingwei, Uversky, Dunker, Yang

Savoirs

Renal haemodynamic, microcirculatory, metabolic and histopathological responses to peritonitis-induced septic shock in pigs

Chvojka Jiri, Sykora Roman, Krouzecky Ales, Radej Jaroslav, Varnerova Veronika, Karvunidis Thomas, Novak Ivan, Matejovic, Matejovic Martin, Hes Ondrej, Radermacher Peter

Savoirs

Promoting synergistic research and education in genomics and bioinformatics

Arabnia, Deng, Deng Youping, Yang, Zhu

Savoirs

Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences

Ettwiller Laurence, Budd Aidan, Spitz François, Wittbrodt, Wittbrodt Joachim

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Evolutionary-new centromeres preferentially emerge within gene deserts

Lomiento Mariana, D'Addabbo Pietro, Rocchi, Jiang Zhaoshi, Eichler, Rocchi Mariano

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Quantitative protein expression profiling reveals extensive post-transcriptional regulation and post-translational modifications in schizont-stage malaria parasites

Foth, Zhang Neng, Mok Sachel, Preiser, Bozdech, Bozdech Zbynek