biomed

Savoirs

Coregulation of transcription factors and microRNAs in human transcriptional regulatory network

Chen Cho-Yi, Chen Shui-Tein, Fuh Chiou-Shann, Juan Hsueh-Fen, Huang Hsuan-Cheng, Huang

Savoirs

On the PATHGROUPS approach to rapid small phylogeny

Zheng Chunfang, Sankoff, Sankoff David

Savoirs

GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products

Kim Jihun, Yoon, Lee, Park, Kim

Savoirs

Interaction site prediction by structural similarity to neighboring clusters in protein-protein interaction networks

Monji Hiroyuki, Koizumi Satoshi, Ozaki Tomonobu, Ohkawa, Ohkawa Takenao

Savoirs

PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach

Sahraeian, Yoon, Yoon Byung-Jun

Savoirs

Query-based biclustering of gene expression data using Probabilistic Relational Models

Zhao Hui, Cloots Lore, Van, Wu Yan, De, Storms Valerie, Meysman Pieter, Engelen Kristof, Marchal Kathleen, Marchal

Savoirs

Ligand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sites

Totrov

Savoirs

Integrated metabolome and transcriptome analysis of the NCI60 dataset

Su Gang, Burant, Beecher, Athey, Meng, Meng Fan

Savoirs

Learning probabilistic models of hydrogen bond stability from molecular dynamics simulation trajectories

Chikalov Igor, Yao Peggy, Moshkov Mikhail, Latombe, Latombe Jean-Claude

Savoirs

IGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis

Hsu Kai-Cheng, Chen Yen-Fu, Lin Shen-Rong, Yang Jinn-Moon, Yang

Savoirs

A study on the flexibility of enzyme active sites

Weng Yi-Zhong, Chang Darby, Huang Yu-Feng, Lin, Lin Chih-Wei

Savoirs

Changed epitopes drive the antigenic drift for influenza A (H3N2) viruses

Huang Jhang-Wei, Yang Jinn-Moon, Yang

Savoirs

Hsp90/Cdc37 Chaperone/co-chaperone complex, a novel junction anticancer target elucidated by the mode of action of herbal drug Withaferin A

Grover Abhinav, Shandilya Ashutosh, Agrawal Vibhuti, Pratik Piyush, Bhasme Divya, Bisaria, Sundar, Sundar Durai

Savoirs

Potent bace-1 inhibitor design using pharmacophore modeling, in silico screening and molecular docking studies

John Shalini, Thangapandian Sundarapandian, Sakkiah Sugunadevi, Lee Keun, Lee

Savoirs

The G protein-coupled receptors in the pufferfish Takifugu rubripes

Sarkar Anita, Kumar Sonu, Sundar, Sundar Durai

Savoirs

Predicting gene expression in T cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models

Roider, Do, Costa, De

Savoirs

Reconstructing phylogeny from metabolic substrate-product relationships

Chang Che-Wei, Lyu Ping-Chiang, Arita, Arita Masanori

Savoirs

The choice of null distributions for detecting gene-gene interactions in genome-wide association studies

Yang Can, Wan Xiang, He Zengyou, Yang Qiang, Xue Hong, Yu Weichuan, Yu

Savoirs

GARNET – gene set analysis with exploration of annotation relations

Rho Kyoohyoung, Kim Bumjin, Jang Youngjun, Lee Sanghyun, Bae Taejeong, Seo Jihae, Seo Chaehwa, Lee Jihyun, Kang Hyunjung, Yu Ungsik, Kim Sunghoon, Lee Sanghyuk, Kim

Savoirs

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

Mitra Suparna, Rupek Paul, Urich Tim, Meyer Folker, Wilke Andreas, Huson, Gilbert, Richter

Savoirs

Strobe sequence design for haplotype assembly

Lo Christine, Bashir Ali, Bansal Vikas, Bafna, Bafna Vineet

Savoirs

Modeling allosteric signal propagation using protein structure networks

Park Keunwan, Kim Dongsup, Kim

Savoirs

Motif-All: discovering all phosphorylation motifs

He Zengyou, Yang Can, Guo Guangyu, Li Ning, Yu Weichuan, Yu

Savoirs

Characterization and sequence prediction of structural variations in α-helix

Tendulkar, Wangikar

Savoirs

Score regularization for peptide identification

He Zengyou, Zhao Hongyu, Yu Weichuan, Yu

Savoirs

Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception

Qian Xiaoning, Yoon, Yoon Byung-Jun

Savoirs

Enhanced stochastic optimization algorithm for finding effective multi-target therapeutics

Yoon

Savoirs

A genetic algorithm-based boolean delay model of intracellular signal transduction in inflammation

Kang Chu, Chuang Yung, Tung Kai, Chao Chun, Tang Chuan, Peng Shih, Wong, Wong David

Savoirs

SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model

Lee Nung, Wang Dianhui, Wang

Savoirs

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses

Górecki Pawel, Burleigh, Eulenstein, Eulenstein Oliver