biomed

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Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites

Ausiello Gabriele, Peluso Daniele, Via Allegra, Helmer-Citterich, Helmer-Citterich Manuela

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A computational approach for detecting peptidases and their specific inhibitors at the genome level

Bartoli Lisa, Calabrese Remo, Fariselli Piero, Mita, Casadio, Casadio Rita

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Data handling strategies for high throughput pyrosequencers

Trombetti, Bonnal, Rizzi Ermanno, De, Milanesi Luciano, Milanesi

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The Genopolis Microarray Database

Splendiani Andrea, Brandizi Marco, Even Gael, Beretta Ottavio, Pavelka Norman, Pelizzola Mattia, Mayhaus Manuel, Foti Maria, Mauri Giancarlo, Ricciardi-Castagnoli, Ricciardi-Castagnoli Paola

Savoirs

P53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silicoprediction and microarray data

Sbisà Elisabetta, Catalano Domenico, Grillo Giorgio, Licciulli Flavio, Turi Antonio, Liuni Sabino, Pesole Graziano, De, Caratozzolo Mariano, D'Erchia Anna, Navarro Beatriz, Tullo Apollonia, Saccone Cecilia, Gisel Andreas

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BioWMS: a web-based Workflow Management System for bioinformatics

Bartocci Ezio, Corradini Flavio, Merelli Emanuela, Scortichini, Scortichini Lorenzo

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Biowep: a workflow enactment portal for bioinformatics applications

Milanesi, Bartocci Ezio, Bertolini Guglielmo, De, Marra Domenico, Mauri Giancarlo, Merelli Emanuela, Milanesi Luciano, Romano Paolo

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SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics – exploring current scientific literature for emerging topics

Rebholz-Schuhman Dietrich, Cameron Graham, Clark Dominic, Martin-Sanchez Fernando, Porro Ivan, Beltrame Francesco, Tollis Ioannis, Van, Del, Jean-Louis Coatrieux, Van, Milanesi Luciano

Savoirs

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data

Rambaldi Davide, Felice Barbara, Praz Viviane, Bucher Philip, Cittaro Davide, Guffanti, Guffanti Alessandro

Savoirs

Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation

Neretti Nicola, Remondini Daniel, Tatar Marc, Sedivy, Pierini Michela, Mazzatti Dawn, Franceschi Claudio, Castellani, Powell Jonathan

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Environment specific substitution tables for thermophilic proteins

Mizuguchi K, Sele M, Cubellis, Cubellis Mv

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Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists

Masseroli Marco, Bellistri Elisa, Franceschini Andrea, Pinciroli, Pinciroli Francesco

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ESTuber db: an online database for Tuber borchiiEST sequences

Lazzari Barbara, Caprera Andrea, Stella Alessandra, Viotti, Viotti Angelo, Milanesi Luciano, Cosentino Cristian

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On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes

Fondi Marco, Brilli Matteo, Fani, Fani Renato

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ProCMD: a database and 3D web resource for protein C mutants

D'Ursi Pasqualina, Marino Francesca, Caprera Andrea, Faioni, Rovida, Rovida Ermanna, Milanesi Luciano

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Significance analysis of microarray transcript levels in time series experiments

Toffolo Gianna, Nair, Greenlund, Cobelli, Cobelli Claudio, Di

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Vascular endothelial growth factor as a non-invasive marker of pulmonary vascular remodeling in patients with bronchitis-type of COPD

Kanazawa Hiroshi, Asai Kazuhisa, Nomura, Nomura Saeko

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Does respiratory health contribute to the effects of long-term air pollution exposure on cardiovascular mortality?

Schikowski Tamara, Sugiri Dorothea, Ranft Ulrich, Gehring Ulrike, Heinrich Joachim, Wichmann H-Erich, Krämer Ursula, Krämer

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Overcoming beta-agonist tolerance: high dose salbutamol and ipratropium bromide. Two randomised controlled trials

Haney Sarah, Hancox

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Gender and respiratory factors associated with dyspnea in chronic obstructive pulmonary disease

Casanova Ciro, Montejo, Aguirre-Jaime Armando, Celli, De

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Expression of Toll-like Receptor 9 in nose, peripheral blood and bone marrow during symptomatic allergic rhinitis

Fransson Mattias, Benson Mikael, Erjefält, Jansson Lennart, Uddman Rolf, Björnsson Sven, Cardell Lars-Olaf, Adner, Adner Mikael

Savoirs

Antagonism of the prostaglandin D2receptor CRTH2 attenuates asthma pathology in mouse eosinophilic airway inflammation

Uller Lena, Mathiesen Jesper, Alenmyr Lisa, Korsgren Magnus, Ulven Trond, Högberg Thomas, Andersson Gunnar, Persson, Kostenis, Kostenis Evi

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Rapamycin attenuates hypoxia-induced pulmonary vascular remodeling and right ventricular hypertrophy in mice

Paddenberg Renate, Stieger Philipp, Faulhammer Petra, Goldenberg Anna, Tillmanns, Kummer Wolfgang, Braun-Dullaeus, Von

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Reference values of Forced Expiratory Volumes and pulmonary flows in 3–6 year children: a cross-sectional study

Piccioni Pavilio, Borraccino Alberto, Forneris Maria, Migliore Enrica, Carena Carlo, Bignamini Elisabetta, Fassio Stefania, Cordola Giorgio, Arossa Walter, Bugiani, Bugiani Massimiliano

Savoirs

Surfactant disaturated-phosphatidylcholine kinetics in acute respiratory distress syndrome by stable isotopes and a two compartment model

Cogo, Toffolo Gianna, Ori Carlo, Vianello Andrea, Chierici Marco, Gucciardi Antonina, Cobelli Claudio, Baritussio Aldo, Carnielli

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Impact on respiratory tract infections of heptavalent pneumococcal conjugate vaccine administered at 3, 5 and 11 months of age

Esposito Susanna, Lizioli Alessandro, Lastrico Annalisa, Begliatti Enrica, Rognoni Alessandro, Tagliabue Claudia, Cesati Laura, Carreri Vittorio, Principi Nicola, Principi

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Upregulation of pirin expression by chronic cigarette smoking is associated with bronchial epithelial cell apoptosis

Crystal, Gelbman, Heguy Adriana, O'Connor, Zabner Joseph

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Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans

Vavouri Tanya, Walter Klaudia, Gilks, Lehner Ben, Elgar, Elgar Greg

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Sequential gene profiling of basal cell carcinomas treated with imiquimod in a placebo-controlled study defines the requirements for tissue rejection

Panelli, Stashower, Slade, Smith Kina, Norwood Christopher, Abati Andrea, Fetsch Patricia, Filie Armando, Walters Shelley-Ann, Astry Calvin, Aricó Eleonora, Zhao Yingdong, Selleri Silvia, Wang Ena, Marincola

Savoirs

Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis

Lejay, Dean Alexis, Chiaromonte Francesca, Shasha, Coruzzi, Gutiérrez