biomed

Savoirs

Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences

Fu Yan, Jia Wei, Lu Zhuang, Wang Haipeng, Yuan Zuofei, Chi Hao, Li You, Xiu Liyun, Wang Wenping, Liu Chao, Wang Leheng, Sun Ruixiang, Gao Wen, Qian Xiaohong, He Si-Min

Savoirs

Extract interaction detection methods from the biological literature

Wang Hongning, Huang Minlie, Zhu Xiaoyan, Zhu

Savoirs

Semi-supervised gene shaving method for predicting low variation biological pathways from genome-wide data

Zhu

Savoirs

Comparative analysis of the JAK/STAT signaling through erythropoietin receptor and thrombopoietin receptor using a systems approach

Won Hong-Hee, Park Inho, Lee Eunjung, Kim Jong-Won, Lee Doheon, Lee

Savoirs

Mutual information estimation reveals global associations between stimuli and biological processes

Suzuki Taiji, Sugiyama Masashi, Kanamori Takafumi, Sese, Sese Jun

Savoirs

Analysis of mass spectrometry data using sub-spectra

Meuleman Wouter, Engwegen, Wessels, Reinders, Gast

Savoirs

ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets

Lin Guan, Cai Zhipeng, Lin Guohui, Chakraborty Sounak, Xu Dong, Xu

Savoirs

Quality assessment of tandem mass spectra using support vector machine (SVM)

Zou An-Min, Wu Fang-Xiang, Ding Jia-Rui, Poirier

Savoirs

A computational analysis of SARS cysteine proteinase-octapeptide substrate interaction: implication for structure and active site binding mechanism

Phakthanakanok Krongsakda, Ratanakhanokchai Khanok, Kyu Khin, Sompornpisut Pornthep, Watts Aaron, Pinitglang, Pinitglang Surapong

Savoirs

Towards comprehensive structural motif mining for better fold annotation in the "twilight zone" of sequence dissimilarity

Jia Yi, Huan Jun, Buhr Vincent, Zhang Jintao, Carayannopoulos

Savoirs

Prediction of amyloid fibril-forming segments based on a support vector machine

Tian Jian, Wu Ningfeng, Guo Jun, Fan Yunliu, Fan

Savoirs

Semi-supervised protein subcellular localization

Xu Qian, Hu Derek, Xue Hong, Yu Weichuan, Yang Qiang, Yang

Savoirs

Studying the unfolding process of protein G and protein L under physical property space

Zhao Liling, Wang Jihua, Dou Xianghua, Cao Zanxia, Cao

Savoirs

SE: an algorithm for deriving sequence alignment from a pair of superimposed structures

Tai Chin-Hsien, Kim Changhoon, Lee Byungkook, Vincent, Lee

Savoirs

A method to improve protein subcellular localization prediction by integrating various biological data sources

Tung Thai, Lee Doheon, Lee

Savoirs

Prediction of RNA secondary structure with pseudoknots using integer programming

Poolsap Unyanee, Kato Yuki, Akutsu, Akutsu Tatsuya

Savoirs

Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures

Sun Weitao, He Jing, He

Savoirs

Predicting disordered regions in proteins using the profiles of amino acid indices

Han Pengfei, Zhang Xiuzhen, Feng Zhi-Ping, Feng

Savoirs

Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses

Huang Jhang-Wei, King Chwan-Chuen, Yang Jinn-Moon, Yang

Savoirs

Fine-grained parallel RNAalifold algorithm for RNA secondary structure prediction on FPGA

Xia Fei, Dou Yong, Zhou Xingming, Yang Xuejun, Xu Jiaqing, Zhang Yang, Zhang

Savoirs

HHMMiR: efficient de novoprediction of microRNAs using hierarchical hidden Markov models

Kadri Sabah, Hinman Veronica, Benos

Savoirs

Sequence-structure relations of pseudoknot RNA

Reidys, Li, Huang

Savoirs

Computational prediction of novel non-coding RNAs in Arabidopsis thaliana

Song Dandan, Zheng Binglian, Deng Zhidong, Lu Bao-Liang, Chen Xuemei, Jiang, Jiang Tao, Yang Yang, Yu Bin

Savoirs

Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information

Fei, Joung Je-Gun, Fei Zhangjun

Savoirs

A structural interpretation of the effect of GC-content on efficiency of RNA interference

Chan Chi, Carmack, Maliyekkel Anil, Shao Yu, Roninson, Ding, Ding Ye, Long

Savoirs

Predicting microRNA targets in time-series microarray experiments via functional data analysis

Parker, Wen Jiayu, Wen

Savoirs

A predictive model for respiratory syncytial virus (RSV) hospitalisation of premature infants born at 33–35 weeks of gestational age, based on data from the Spanish FLIP study

Simões, Carbonell-Estrany Xavier, Fullarton, Liese, Figueras-Aloy Jose, Doering Gunther, Guzman Juana, European

Savoirs

The effects of interleukin-8 on airway smooth muscle contraction in cystic fibrosis

Govindaraju Vasanthi, Michoud Marie-Claire, Ferraro Pasquale, Arkinson Janine, Safka Katherine, Valderrama-Carvajal Hector, Martin

Savoirs

Nitric oxide gas phase release in human small airway epithelial cells

Jiang Jingjing, Malavia Nikita, Suresh Vinod, George

Savoirs

Neuroprotective mechanisms of puerarin in middle cerebral artery occlusion-induced brain infarction in rats

Chang Yi, Hsieh Cheng-Ying, Peng Zi-Aa, Yen Ting-Lin, Hsiao George, Chou Duen-Suey, Chen Chien-Ming, Sheu, Sheu Joen-Rong