biomed

Savoirs

Comparative analysis of thermophilic and mesophilic proteins using Protein Energy Networks

Vijayabaskar Ms, Vishveshwara, Vishveshwara Saraswathi

Savoirs

Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information

Raghava, Mishra

Savoirs

A novel approach for haplotype-based association analysis using family data

Chen Yixuan, Li, Li Jing, Xin Li

Savoirs

Computational prediction of type III secreted proteins from gram-negative bacteria

Zhao Jiayuan, Ma Wenbo, Jiang, Jiang Tao, Morgan, Yang Yang

Savoirs

A fast indexing approach for protein structure comparison

Bailey James, Konagurthu, Ramamohanarao, Ramamohanarao Kotagiri, Lei Zhang

Savoirs

Structure prediction for the helical skeletons detected from the low resolution protein density map

Al, Sun Weitao, He Jing, He

Savoirs

Stability analysis of the GAL regulatory network in Saccharomyces cerevisiae and Kluyveromyces lactis

Kareenhalli Venkatesh, Malakar Pushkar, Safonov, Viswanathan, Pao, Kulkarni

Savoirs

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models

Bansal, Burleigh, Eulenstein, Eulenstein Oliver

Savoirs

Analysis of interactions between ribosomal proteins and RNA structural motifs

Ciriello Giovanni, Gallina Claudio, Guerra Concettina, Guerra

Savoirs

New decoding algorithms for Hidden Markov Models using distance measures on labellings

Truszkowski, Truszkowski Jakub, Brown

Savoirs

A hybrid approach to protein folding problem integrating constraint programming with local search

Ullah Abu, Steinhöfel, Steinhöfel Kathleen

Savoirs

Better score function for peptide identification with ETD MS/MS spectra

Liu Xiaowen, Shan Baozhen, Xin Lei, Ma Bin, Ma

Savoirs

Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways

Mano Adi, Tuller Tamir, Béjà Oded, Pinter

Savoirs

Hit integration for identifying optimal spaced seeds

Chung Won-Hyoung, Park Seong-Bae, Park

Savoirs

Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspective

Krishnan Spt, Liang Sim, Veeravalli, Veeravalli Bharadwaj

Savoirs

Functional characterization and topological modularity of molecular interaction networks

Pandey Jayesh, Koyutürk Mehmet, Grama, Grama Ananth

Savoirs

Heuristics for the inversion median problem

Rajan Vaibhav, Xu Andrew, Lin Yu, Swenson, Moret

Savoirs

Efficient protein alignment algorithm for protein search

Lu Zaixin, Zhao Zhiyu, Fu, Fu Bin

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A weighted q-gram method for glycan structure classification

Ching Wai-Ki, Li Limin, Yamaguchi Takako, Aoki-Kinoshita

Savoirs

Detection of characteristic sub pathway network for angiogenesis based on the comprehensive pathway network

Huang Yezhou, Li Shao, Li

Savoirs

Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism

Saigo Hiroto, Hattori Masahiro, Kashima Hisashi, Tsuda, Tsuda Koji

Savoirs

Predicting the protein-protein interactions using primary structures with predicted protein surface

Chang Darby, Syu Yu-Tang, Lin, Lin Po-Chang

Savoirs

A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles

Chin Chia-Hao, Chen Shu-Hwa, Ho Chin-Wen, Ko Ming-Tat, Lin, Lin Chung-Yen

Savoirs

Genome rearrangements with duplications

Bader

Savoirs

Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM)

Agarwal Sumeet, Vaz Candida, Bhattacharya Alok, Srinivasan, Srinivasan Ashwin

Savoirs

Decoding HMMs using the kbest paths: algorithms and applications

Golod, Golod Daniil, Brown

Savoirs

Using genomic signatures for HIV-1 sub-typing

Pandit Aridaman, Sinha, Sinha Somdatta

Savoirs

HORI: a web server to compute Higher Order Residue Interactions in protein structures

Sundaramurthy Pandurangan, Shameer Khader, Sreenivasan Raashi, Gakkhar Sunita, Sowdhamini, Sowdhamini Ramanathan

Savoirs

An ontology-based search engine for protein-protein interactions

Park Byungkyu, Han, Han Kyungsook

Savoirs

Learning to predict expression efficacy of vectors in recombinant protein production

Chan Wen-Ching, Liang Po-Huang, Shih Yan-Ping, Yang Ueng-Cheng, Lin Wen-Chang, Hsu Chun-Nan, Hsu